From 6a7a0483eaf984bd30846956c35921ed61396bcc Mon Sep 17 00:00:00 2001 From: David Rotermund <54365609+davrot@users.noreply.github.com> Date: Thu, 13 Jul 2023 15:36:27 +0200 Subject: [PATCH] Update README.md --- README.md | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index d010452..98f71d4 100644 --- a/README.md +++ b/README.md @@ -58,7 +58,13 @@ For installing torch under Windows see here: https://pytorch.org/get-started/loc - scale data_svd (-> to_remove) and remove it from data (data -= to_remove) - the movie is downsamples in time - torchaudio.functional.resample from 30fps to 3 fps - - bandpass filter 0.1 - 1.0 Hz + - bandpass filter 0.1 - 1.0 Hz (based on torchaudio's filtfilt) - SVD Denosing + - A windows is moved over the spatial dimensions. The window has the size (2*window_size+1) x (2*window_size+1) with window_size=2 + - A SVD is calculated over each individual window. + - Calculate whitening matrices and co from it. + - Whiten the movie patch and average over the spatial dimensions. -> data_svd + - Calculate scaling factor between data_svd and data for all the individual pixels. + - Use the time series in the center of the window as denoised signal. - torch.nn.AvgPool2d - save as ..._decorrelated.npy