diff --git a/test_average_calculate.py b/test_average_calculate.py index a4f4497..45b08d5 100644 --- a/test_average_calculate.py +++ b/test_average_calculate.py @@ -5,7 +5,7 @@ from tqdm import trange # path: str = "/data_1/robert/2021-05-05/M3852M/raw" path: str = "/data_1/robert/2021-05-21/M3852M/raw" -initital_mask_name: str | None = "mask.npy" +initital_mask_name: str | None = None initital_mask_update: bool = True initital_mask_roi: bool = False # default: True @@ -15,7 +15,7 @@ start_position: int = 0 start_position_coefficients: int = 100 remove_heartbeat: bool = True # i.e. use SVD bin_size: int = 4 -threshold: float | None = 0.05 # Between 0 and 1.0 +threshold: float | None = None # Between 0 and 1.0 display_logging_messages: bool = False @@ -75,8 +75,11 @@ for trial_id in trange(0, len(list_of_trials)): result += result_temp assert result is not None -assert mask is not None + result /= n -np.savez("result.npz", result=result.cpu(), mask=mask.cpu()) +np.save("result.npy", result.cpu()) + +if mask is not None: + np.save("mask.npy", mask.cpu())