From 0658c77467a4d271bbf72236f49eb0b3859deef6 Mon Sep 17 00:00:00 2001
From: David Rotermund <54365609+davrot@users.noreply.github.com>
Date: Mon, 10 Jul 2023 14:25:15 +0200
Subject: [PATCH] Add files via upload

---
 test_average_calculate.py | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/test_average_calculate.py b/test_average_calculate.py
index a4f4497..45b08d5 100644
--- a/test_average_calculate.py
+++ b/test_average_calculate.py
@@ -5,7 +5,7 @@ from tqdm import trange
 
 # path: str = "/data_1/robert/2021-05-05/M3852M/raw"
 path: str = "/data_1/robert/2021-05-21/M3852M/raw"
-initital_mask_name: str | None = "mask.npy"
+initital_mask_name: str | None = None
 initital_mask_update: bool = True
 initital_mask_roi: bool = False  # default: True
 
@@ -15,7 +15,7 @@ start_position: int = 0
 start_position_coefficients: int = 100
 remove_heartbeat: bool = True  # i.e. use SVD
 bin_size: int = 4
-threshold: float | None = 0.05  # Between 0 and 1.0
+threshold: float | None = None  # Between 0 and 1.0
 
 
 display_logging_messages: bool = False
@@ -75,8 +75,11 @@ for trial_id in trange(0, len(list_of_trials)):
         result += result_temp
 
 assert result is not None
-assert mask is not None
+
 
 result /= n
 
-np.savez("result.npz", result=result.cpu(), mask=mask.cpu())
+np.save("result.npy", result.cpu())
+
+if mask is not None:
+    np.save("mask.npy", mask.cpu())