diff --git a/config.json b/config.json deleted file mode 100644 index 2746a54..0000000 --- a/config.json +++ /dev/null @@ -1,62 +0,0 @@ -{ - "basic_path": "/data_1/hendrik", - "recoding_data": "2021-06-17", - "mouse_identifier": "M3859M", - //"basic_path": "/data_1/robert", - //"recoding_data": "2021-10-05", - //"mouse_identifier": "M3879M", - "raw_path": "raw", - "export_path": "output", - "ref_image_path": "ref_images", - // Ratio Sequence - "classical_ratio_mode": true, // true: a/d false: 1+a-d - // Regression - "target_camera_acceptor": "acceptor", - "regressor_cameras_acceptor": [ - "oxygenation", - "volume" - ], - "target_camera_donor": "donor", - "regressor_cameras_donor": [ - "oxygenation", - "volume" - ], - // binning - "binning_enable": true, - "binning_at_the_end": false, - "binning_kernel_size": 4, - "binning_stride": 4, - "binning_divisor_override": 1, - // alignment - "alignment_batch_size": 200, - "rotation_stabilization_threshold_factor": 3.0, // >= 1.0 - "rotation_stabilization_threshold_border": 0.9, // <= 1.0 - // Heart beat detection - "lower_freqency_bandpass": 5.0, // Hz - "upper_freqency_bandpass": 14.0, // Hz - "heartbeat_filtfilt_chuck_size": 10, - // Gauss smear - "gauss_smear_spatial_width": 8, - "gauss_smear_temporal_width": 0.1, - "gauss_smear_use_matlab_mask": false, - // LED Ramp on - "skip_frames_in_the_beginning": 100, // Frames - // PyTorch - "dtype": "float32", - "force_to_cpu": false, - // Save - "save_as_python": true, // produces .npz files (compressed) - "save_as_matlab": false, // produces .hd5 file (compressed) - // Save extra information - "save_alignment": false, - "save_heartbeat": false, - "save_factors": false, - "save_regression_coefficients": false, - // Not important parameter - "required_order": [ - "acceptor", - "donor", - "oxygenation", - "volume" - ] -} \ No newline at end of file