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Delete config_fatma_gevi_M0134M_SessionA2_Test.json

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David Rotermund 2025-03-19 18:28:29 +01:00 • committed by GitHub
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config_fatma_gevi_M0134M_SessionA2_Test.json
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{
"basic_path": "/data_1/fatma/GEVI",
"recoding_data": "2024-10-16",
"mouse_identifier": "M0134M_SessionA2_Test",
"export_path": "output_2024-10-16_M0134M_SessionA2_Test",
"ref_image_path": "ref_images_2024-10-16_M0134M_SessionA2_Test",
"raw_path": "raw",
"heartbeat_remove": true, // if gevi must be true; geci: who knows...
"gevi": true, // true => gevi, false => geci
// Ratio Sequence
"classical_ratio_mode": true, // true: a/d false: 1+a-d
// Regression
"target_camera_acceptor": "acceptor",
"regressor_cameras_acceptor": [
"oxygenation",
"volume"
],
"target_camera_donor": "donor",
"regressor_cameras_donor": [
"oxygenation",
"volume"
],
// binning
"binning_enable": true,
"binning_at_the_end": false,
"binning_kernel_size": 4,
"binning_stride": 4,
"binning_divisor_override": 1,
// alignment
"alignment_batch_size": 200,
"rotation_stabilization_threshold_factor": 3.0, // >= 1.0
"rotation_stabilization_threshold_border": 0.9, // <= 1.0
// Heart beat detection
"lower_freqency_bandpass": 5.0, // Hz
"upper_freqency_bandpass": 14.0, // Hz
"heartbeat_filtfilt_chuck_size": 10,
// Gauss smear
"gauss_smear_spatial_width": 8,
"gauss_smear_temporal_width": 0.1,
"gauss_smear_use_matlab_mask": false,
// LED Ramp on
"skip_frames_in_the_beginning": 100, // Frames
// PyTorch
"dtype": "float32",
"force_to_cpu": false,
// Save
"save_as_python": true, // produces .npz files (compressed)
"save_as_matlab": false, // produces .hd5 file (compressed)
// Save extra information
"save_alignment": false,
"save_heartbeat": false,
"save_factors": false,
"save_regression_coefficients": false,
// Not important parameter
"required_order": [
"acceptor",
"donor",
"oxygenation",
"volume"
]
}