diff --git a/stage_4c_viewer.py b/stage_4c_viewer.py deleted file mode 100644 index 9c70616..0000000 --- a/stage_4c_viewer.py +++ /dev/null @@ -1,56 +0,0 @@ -import os -import numpy as np - -import matplotlib.pyplot as plt # type:ignore - -from functions.create_logger import create_logger -from functions.load_config import load_config - -import argh - - -def main( - *, config_filename: str = "config.json", experiment_id: int = 1, trial_id: int = 1 -) -> None: - - experiment_name: str = f"Exp{experiment_id:03d}_Trial{trial_id:03d}" - mylogger = create_logger( - save_logging_messages=False, - display_logging_messages=False, - log_stage_name="stage_4c", - ) - - config = load_config(mylogger=mylogger, filename=config_filename) - - temp_path = os.path.join( - config["export_path"], experiment_name + "_inspect_images.npz" - ) - data = np.load(temp_path) - - acceptor = data["acceptor"][0, ...] - donor = data["donor"][0, ...] - oxygenation = data["oxygenation"][0, ...] - volume = data["volume"][0, ...] - - plt.figure(1) - plt.imshow(acceptor, cmap="hot") - plt.title(f"Acceptor Experiment: {experiment_id:03d} Trial:{trial_id:03d}") - plt.show(block=False) - plt.figure(2) - plt.imshow(donor, cmap="hot") - plt.title(f"Donor Experiment: {experiment_id:03d} Trial:{trial_id:03d}") - plt.show(block=False) - plt.figure(3) - plt.imshow(oxygenation, cmap="hot") - plt.title(f"Oxygenation Experiment: {experiment_id:03d} Trial:{trial_id:03d}") - plt.show(block=False) - plt.figure(4) - plt.imshow(volume, cmap="hot") - plt.title(f"Volume Experiment: {experiment_id:03d} Trial:{trial_id:03d}") - plt.show(block=True) - - return - - -if __name__ == "__main__": - argh.dispatch_command(main)