{ "basic_path": "/data_1/hendrik", "recoding_data": "2023-03-16", "mouse_identifier": "M_Sert_Cre_46", "raw_path": "raw", "export_path": "output_M_Sert_Cre_46", "ref_image_path": "ref_images_M_Sert_Cre_46", "heartbeat_remove": false, "gevi": false, // true => gevi, false => geci // Ratio Sequence "classical_ratio_mode": true, // true: a/d false: 1+a-d // Regression //"target_camera_acceptor": "acceptor", "target_camera_acceptor": "", "regressor_cameras_acceptor": [ "oxygenation", "volume" ], "target_camera_donor": "donor", "regressor_cameras_donor": [ // "oxygenation", "volume" ], // binning "binning_enable": true, "binning_at_the_end": false, "binning_kernel_size": 4, "binning_stride": 4, "binning_divisor_override": 1, // alignment "alignment_batch_size": 200, "rotation_stabilization_threshold_factor": 3.0, // >= 1.0 "rotation_stabilization_threshold_border": 0.9, // <= 1.0 // Heart beat detection "lower_freqency_bandpass": 5.0, // Hz "upper_freqency_bandpass": 14.0, // Hz "heartbeat_filtfilt_chuck_size": 10, // Gauss smear "gauss_smear_spatial_width": 8, "gauss_smear_temporal_width": 0.1, "gauss_smear_use_matlab_mask": false, // LED Ramp on "skip_frames_in_the_beginning": 100, // Frames // PyTorch "dtype": "float32", "force_to_cpu": false, // Save "save_as_python": true, // produces .npz files (compressed) "save_as_matlab": false, // produces .hd5 file (compressed) // Save extra information "save_alignment": false, "save_heartbeat": false, "save_factors": false, "save_regression_coefficients": false, // Not important parameter "required_order": [ "acceptor", "donor", "oxygenation", "volume" ] }