{ "basic_path": "/data_1/robert", "recoding_data": "2021-05-05", "mouse_identifier": "M3852M", "raw_path": "raw", "export_path": "output", "ref_image_path": "ref_images", "required_order": [ "acceptor", "donor", "oxygenation", "volume" ], "classical_ratio_mode": false, // true: a/d false: 1+a-d // Regression "target_camera_acceptor": "acceptor", "regressor_cameras_acceptor": [ "oxygenation", "volume" ], "target_camera_donor": "donor", "regressor_cameras_donor": [ "oxygenation", "volume" ], // binning "binning_enable": true, "binning_before_alignment": false, // otherwise at the end after everything else "binning_kernel_size": 4, "binning_stride": 4, "binning_divisor_override": 1, // alignment "alignment_batch_size": 200, // Heart beat detection "lower_freqency_bandpass": 5.0, // Hz "upper_freqency_bandpass": 14.0, // Hz "heartbeat_filtfilt_chuck_size": 10, // Gauss smear "gauss_smear_spatial_width": 8, "gauss_smear_temporal_width": 0.1, "gauss_smear_use_matlab_mask": false, // LED Ramp on "skip_frames_in_the_beginning": 100, // Frames // PyTorch "dtype": "float32", "force_to_cpu": false }