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David Rotermund 2023-07-19 18:34:10 +02:00 committed by GitHub
parent 12d9023299
commit b5bdeda529
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1 changed files with 4 additions and 4 deletions
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8
functions/fisher_exact.py
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@ -3,10 +3,10 @@ from scipy.stats import fisher_exact
def fisher_excat_upper( def fisher_excat_upper(
correct_pattern_count: int, number_of_pattern: int, p_threshold: float = 5.0 / 100.0 correct_pattern_count: int, number_of_pattern: int, p_threshold: float = 5.0 / 100.0
) -> float | None: ) -> float:
error_pattern_count = int(number_of_pattern - correct_pattern_count) error_pattern_count = int(number_of_pattern - correct_pattern_count)
bound = None bound = 100.0
for u in range(0, correct_pattern_count): for u in range(0, correct_pattern_count):
z = int(error_pattern_count + u) z = int(error_pattern_count + u)
_, pvalue = fisher_exact( _, pvalue = fisher_exact(
@ -22,10 +22,10 @@ def fisher_excat_upper(
def fisher_excat_lower( def fisher_excat_lower(
correct_pattern_count: int, number_of_pattern: int, p_threshold: float = 5.0 / 100.0 correct_pattern_count: int, number_of_pattern: int, p_threshold: float = 5.0 / 100.0
) -> float | None: ) -> float:
error_pattern_count = int(number_of_pattern - correct_pattern_count) error_pattern_count = int(number_of_pattern - correct_pattern_count)
bound = None bound = 0.0
for u in range(0, error_pattern_count): for u in range(0, error_pattern_count):
z = int(error_pattern_count - u) z = int(error_pattern_count - u)
_, pvalue = fisher_exact( _, pvalue = fisher_exact(