72 lines
2.5 KiB
Python
72 lines
2.5 KiB
Python
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import numpy as np
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import os
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import argh
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# mouse:int = 0, 1, 2, 3, 4
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def loader(mouse:int = 0, fpath:str = "/data_1/hendrik/gevi") -> None:
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mouse_name = [
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'M_Sert_Cre_41',
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'M_Sert_Cre_42',
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'M_Sert_Cre_45',
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'M_Sert_Cre_46',
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'M_Sert_Cre_49'
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]
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n_tris = [
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[15, 15, 30, 30, 30, 30,], # 0 in cond 7
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[15, 15, 30, 30, 30, 30,], # 0 in cond 7
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[15, 15, 30, 30, 30, 30,], # 0 in cond 7
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[20, 40, 20, 20,], # 0, 0, 0 in cond 5-7
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[20, 40, 20, 20,], # 0, 0, 0 in cond 5-7
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]
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# 41, 42, 45, 46, 49:
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# "1": "control",
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# "2": "visual control grating 100 1s",
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# "3": "optical Stimulation 20Hz 50% 5 Intervals",
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# "4": "optical Stimulation 20Hz 100% 5 Intervals",
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# "5": "optical Stimulation 20Hz 50% and grating 100",
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# "6": "optical Stimulation 20Hz 100% and grating 100",
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# "7": "grating 3s"
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lbs = [
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['control', 'visual control', 'op20 50 5', 'op20 100 5', 'op20 50 grat', 'op20 100 grat'],
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['control', 'visual control', 'op20 50 5', 'op20 100 5', 'op20 50 grat', 'op20 100 grat'],
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['control', 'visual control', 'op20 50 5', 'op20 100 5', 'op20 50 grat', 'op20 100 grat'],
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['control', 'visual control', 'op20 50 5', 'op20 100 5'],
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['control', 'visual control', 'op20 50 5', 'op20 100 5']
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]
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n_exp = len(n_tris[mouse])
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for i_exp in range(n_exp):
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n_tri = n_tris[mouse][i_exp]
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for i_tri in range(n_tri):
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experiment_name: str = f"Exp{i_exp+1:03d}_Trial{i_tri+1:03d}"
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tmp_fname = os.path.join(
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fpath, "output_" + mouse_name[mouse], experiment_name + "_acceptor_donor.npz"
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)
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print(f'Processing file "{tmp_fname}"...')
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tmp = np.load(tmp_fname)
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tmp_data_sequence = tmp["data_donor"]
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tmp_light_signal = tmp["data_acceptor"]
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if (i_exp == 0) and (i_tri == 0):
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mask = tmp["mask"]
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new_shape = [n_exp, *tmp_data_sequence.shape]
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data_sequence = np.zeros(new_shape)
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light_signal = np.zeros(new_shape)
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data_sequence[i_exp] += tmp_data_sequence / n_tri
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light_signal[i_exp] += tmp_light_signal / n_tri
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np.save("dsq_" + mouse_name[mouse], data_sequence)
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np.save("lsq_" + mouse_name[mouse], light_signal)
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np.save("msq_" + mouse_name[mouse], mask)
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if __name__ == "__main__":
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argh.dispatch_command(loader)
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