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David Rotermund 2024-03-01 01:36:18 +01:00 committed by GitHub
parent 62bd82dab5
commit 9fb22407a9
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2 changed files with 111 additions and 89 deletions
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31
olivia_data_plotter.py
View file

@ -7,23 +7,30 @@ from functions.load_config import load_config
from functions.get_trials import get_trials
import h5py # type: ignore
control_file_handle = h5py.File("ROI_control_49.mat", "r")
import argh
def main(*, experiment_id: int = 1, config_filename: str = "config.json") -> None:
mylogger = create_logger(
save_logging_messages=True,
display_logging_messages=True,
log_stage_name="test_xxx",
)
config = load_config(mylogger=mylogger, filename=config_filename)
roi_path: str = config["ref_image_path"]
control_file_handle = h5py.File(os.path.join(roi_path, "ROI_control.mat"), "r")
control_roi = (np.array(control_file_handle["roi"]).T) > 0
control_file_handle.close()
control_roi = control_roi.reshape((control_roi.shape[0] * control_roi.shape[1]))
s_darken_file_handle = h5py.File("ROI_sDarken_49.mat", "r")
s_darken_file_handle = h5py.File(os.path.join(roi_path, "ROI_sDarken.mat"), "r")
s_darken_roi = (np.array(s_darken_file_handle["roi"]).T) > 0
s_darken_file_handle.close()
s_darken_roi = s_darken_roi.reshape((s_darken_roi.shape[0] * s_darken_roi.shape[1]))
mylogger = create_logger(
save_logging_messages=True, display_logging_messages=True, log_stage_name="test_xxx"
)
config = load_config(mylogger=mylogger)
experiment_id: int = 1
raw_data_path: str = os.path.join(
config["basic_path"],
config["recoding_data"],
@ -31,7 +38,7 @@ raw_data_path: str = os.path.join(
config["raw_path"],
)
data_path: str = "output"
data_path: str = str(config["export_path"])
trails = get_trials(path=raw_data_path, experiment_id=experiment_id)
for i in range(0, trails.shape[0]):
@ -61,3 +68,7 @@ plt.plot(t, s_darken, label="sDarken")
plt.legend()
plt.xlabel("Time [sec]")
plt.show()
if __name__ == "__main__":
argh.dispatch_command(main)

31
olivia_data_plotter_svd.py
View file

@ -8,23 +8,30 @@ from functions.get_trials import get_trials
import h5py # type: ignore
import torch
control_file_handle = h5py.File("ROI_control_49.mat", "r")
import argh
def main(*, experiment_id: int = 1, config_filename: str = "config.json") -> None:
mylogger = create_logger(
save_logging_messages=True,
display_logging_messages=True,
log_stage_name="test_xxx",
)
config = load_config(mylogger=mylogger, filename=config_filename)
roi_path: str = config["ref_image_path"]
control_file_handle = h5py.File(os.path.join(roi_path, "ROI_control.mat"), "r")
control_roi = (np.array(control_file_handle["roi"]).T) > 0
control_file_handle.close()
control_roi = control_roi.reshape((control_roi.shape[0] * control_roi.shape[1]))
s_darken_file_handle = h5py.File("ROI_sDarken_49.mat", "r")
s_darken_file_handle = h5py.File(os.path.join(roi_path, "ROI_sDarken.mat"), "r")
s_darken_roi = (np.array(s_darken_file_handle["roi"]).T) > 0
s_darken_file_handle.close()
s_darken_roi = s_darken_roi.reshape((s_darken_roi.shape[0] * s_darken_roi.shape[1]))
mylogger = create_logger(
save_logging_messages=True, display_logging_messages=True, log_stage_name="test_xxx"
)
config = load_config(mylogger=mylogger)
experiment_id: int = 2
raw_data_path: str = os.path.join(
config["basic_path"],
config["recoding_data"],
@ -32,7 +39,7 @@ raw_data_path: str = os.path.join(
config["raw_path"],
)
data_path: str = "output"
data_path: str = str(config["export_path"])
trails = get_trials(path=raw_data_path, experiment_id=experiment_id)
for i in range(0, trails.shape[0]):
@ -69,3 +76,7 @@ plt.plot(t, ratio_sequence, label="sDarken-control")
plt.legend()
plt.xlabel("Time [sec]")
plt.show()
if __name__ == "__main__":
argh.dispatch_command(main)