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Delete stage_4c_viewer.py

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David Rotermund 2025-03-19 18:29:39 +01:00 • committed by GitHub
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stage_4c_viewer.py
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import os
import numpy as np
import matplotlib.pyplot as plt # type:ignore
from functions.create_logger import create_logger
from functions.load_config import load_config
import argh
def main(
*, config_filename: str = "config.json", experiment_id: int = 1, trial_id: int = 1
) -> None:
experiment_name: str = f"Exp{experiment_id:03d}_Trial{trial_id:03d}"
mylogger = create_logger(
save_logging_messages=False,
display_logging_messages=False,
log_stage_name="stage_4c",
)
config = load_config(mylogger=mylogger, filename=config_filename)
temp_path = os.path.join(
config["export_path"], experiment_name + "_inspect_images.npz"
)
data = np.load(temp_path)
acceptor = data["acceptor"][0, ...]
donor = data["donor"][0, ...]
oxygenation = data["oxygenation"][0, ...]
volume = data["volume"][0, ...]
plt.figure(1)
plt.imshow(acceptor, cmap="hot")
plt.title(f"Acceptor Experiment: {experiment_id:03d} Trial:{trial_id:03d}")
plt.show(block=False)
plt.figure(2)
plt.imshow(donor, cmap="hot")
plt.title(f"Donor Experiment: {experiment_id:03d} Trial:{trial_id:03d}")
plt.show(block=False)
plt.figure(3)
plt.imshow(oxygenation, cmap="hot")
plt.title(f"Oxygenation Experiment: {experiment_id:03d} Trial:{trial_id:03d}")
plt.show(block=False)
plt.figure(4)
plt.imshow(volume, cmap="hot")
plt.title(f"Volume Experiment: {experiment_id:03d} Trial:{trial_id:03d}")
plt.show(block=True)
return
if __name__ == "__main__":
argh.dispatch_command(main)