47 lines
No EOL
1.3 KiB
JSON
47 lines
No EOL
1.3 KiB
JSON
{
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"basic_path": "/data_1/robert",
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"recoding_data": "2021-05-05",
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"mouse_identifier": "M3852M",
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"raw_path": "raw",
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"export_path": "output",
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"ref_image_path": "ref_images",
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"required_order": [
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"acceptor",
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"donor",
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"oxygenation",
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"volume"
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],
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"classical_ratio_mode": false, // true: a/d false: 1+a-d
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// Regression
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"target_camera_acceptor": "acceptor",
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"regressor_cameras_acceptor": [
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"oxygenation",
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"volume"
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],
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"target_camera_donor": "donor",
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"regressor_cameras_donor": [
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"oxygenation",
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"volume"
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],
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// binning
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"binning_enable": true,
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"binning_before_alignment": false, // otherwise at the end after everything else
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"binning_kernel_size": 4,
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"binning_stride": 4,
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"binning_divisor_override": 1,
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// alignment
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"alignment_batch_size": 200,
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// Heart beat detection
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"lower_freqency_bandpass": 5.0, // Hz
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"upper_freqency_bandpass": 14.0, // Hz
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"heartbeat_filtfilt_chuck_size": 10,
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// Gauss smear
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"gauss_smear_spatial_width": 8,
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"gauss_smear_temporal_width": 0.1,
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"gauss_smear_use_matlab_mask": false,
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// LED Ramp on
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"skip_frames_in_the_beginning": 100, // Frames
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// PyTorch
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"dtype": "float32",
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"force_to_cpu": false
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} |